Originally posted by Bob from Aus I have now adjusted my AF by +10 and it seems to have done the trick. I find it difficult to believe I get a back focus issue by placing a TC on it.
As others have suggested, it's simply possible that AF accuracy suffers from the lower contrast of a darker lens. Your experience using flash with the 100 Macro perhaps bears this out - more light, better AF.
I can't remember if the new TC also switches the metering to centre-weighted, or preserves all the normal metering modes in operation, including matrix. If it is the case that the TC forces the camera to go into centre-weighted metering by default (or worse, spot), this may impact the AF performance, since metering and AF are to a degree computed together, especially on on the K-3.
Another thought is that with the TC in use, fewer AF points may be being used than normal. Learning from my reading of how some Canon bodies work, with certain Canon lens models and TCs for example (fast lenses to slow lenses, basically, as detected by the camera) cameras like the 1Dx and 5D3 will start making use of fewer and fewer AF points, according to the 'lightness' profile of the lens. Ultimately the fast 2.8 cross-type sensors in the middle of the AF frame end up being the only ones that really get used.
Perhaps the K-3 and the K-5II's AF system works the same. Even though the K-3 and K-5II will AF down to -3EV, and both have f2.8 cross-type AF sensors at the centre of the frame (1 on the K-5II, 3 on the K-3), maybe the AF on the K-3 with the 60-250 and a TC is only using something like 9 AF points clustered around the centre, or perhaps just the f2.8 luminance flux AF points in the direct centre of the frame. That sort of behaviour might impact the AF adjustment required for the lens with or without the TC mounted , depending on how the camera is shot and tested.