Originally posted by NaClH2O Aperture ring was on "A" on all lenses. I generally shoot in aperture priority and was changing aperture via rear e-dial on all lenses.
well then it looks like the contacts on the lens and your camera body need a good cleaning. Other than that there isn't much I can think of short of a catastrophic electrical failure affecting body and lens communication that could be causing your problems...or perhaps it is the RAW software - sometimes Lightroom confuses my Sigma 100-300mm f/4 APO EX DG with the Sigma 70-200mm f/2.8 APO EX DG - which is annoying*, but thanks to the EXIF search feature it is easily rectified.
*Lightroom also does the same thing with my Nikon D3s raw wiles when I'm using the Sigma 100-300mm f/4 APO EX DG on it.