The following is complete speculation. Read at your own risk:
To my knowledge a global focus adjustment is all that is possible from a service center. Perhaps someone with more expertise can chime in.
It's definitely not as simple as adjusting focus for one or more white balance presets. I think the whole white balance theory has been taken out of proportion. It's possible the camera is programmed to adjust focus accordingly when the reflected source light is measured to be within the low end of the spectrum (via custom or AWB). It's also possible that improved focus results can be obtained by manually selecting the closest white balance preset. Understand that custom white balance is the most accurate method for determining the color temperature of the reflected source light.
This is a software or hardware flaw and not a calibration issue (the way I see it). Software bugs and/or missing features can sometimes be resolved with revised firmware.
Originally posted by bsamcash Are you sure about that? I sent mine in for repair and asked for a calibration with my favorite lens as well. They seemed confident.