Got to say I didn't find this to be a Canon fanboy review at all. Even if it is Apples and Oranges (which he mentions a couple of times at least). It seemed fair and his verdict made the differences quite clear. Overall a short but informative review.
Quote: Pentax 645D Vs. Canon EOS 1Ds Mark III: Verdict
Each of these two cameras are excellent at what they do best. For example, the 1Ds Mark III is a more flexible tool, capable of holding its own when high levels of detail are needed, but without sacrificing aspects for handling such as the compact 35mm form factor, impressive autofocus and high speed continuous shooting.
The areas in which the Canon excels were never going to be the strongest areas of performance for the Pentax 645D. What it lacks in speed it makes up for in sharpness, resolution and other image quality factors, such as white balance performance and dynamic range.
Even though it does seem like apples have been compared to oranges, the differences between the two cameras, especially when it comes to some aspects of image quality, are not as different as night and day and many aspects such as noise performance are very close indeed.
At the end of the day, your particular specialism will dictate which camera is best for you. If you find yourself comparing these two, then it will come down to how much you are likely to be shooting in situations where you are not in control of your subject, the lighting and of time and the variety of different shooting scenarios you'll find yourself in. If you often deal with surprises, erratic subjects etc., then the Canon is a clear winner for you.
If however, you know what you like and tend to stick to it, and what you like is shooting landscapes, portraits under controlled conditions such as in a studio or disciplines like product photography, then the Pentax may be a compelling choice, if you can afford it.
If I had to judge the cameras on image quality alone then the Pentax would be a clear winner. Unfortunately life isn't that straightforward, and as the Canon excels in some areas and the Pentax is superior in others I find it impossible to choose a clear winner in this comparison. Your choice will depend on what you shoot, at the end of the day.