Ok, so where should the flash be? Mounted on the camera it would cause a shadow.
I have a Metz 50 AF-1 which I really like, but when the lens is about an inch or two from the subject (or less even), i put the flash in slave mode on a little hotshoe stand (not sure what it's called, a little piece of plastic with a hotshoe on it) to the side of the subject but it didn't seem to make much difference. Maybe I need to play with the settings a bit more or make the flash less diffuse.
I'll definitely try again stopping down further. I've got a little tripod I can use (since the hive is close to ground level the camera needs to be down low to get the bees by the entrance of the hive, but they just don't hold still very long around the hive.
Thanks to all for the advice