Hi Steve, welcome to the forum. Like several other posters I leave my hood on all the time. I use it for the same reasons; stray light and protection. I don't use filters for protection, I've found the lens hood works well enough for me. I generally leave them on all the time even when in their cases because I find it tiresome to screw on the hood every time I mount the lens.
edit: Forgot to mention that for some lenses (and at some focal lengths) the hood does get in the way of the popup flash. But I usually only use the popup when I'm doing close up work, and the lenses I use for that generally don't interfere with the flash.
NaCl( I guess you could call me a 'hoodie' rather than a 'filterian'
)H2O