The intended point of focus was the tip of the bud. EXIF indicates that centerpoint (spot) focus with AF-S(focus priority) was being used. There seems to be some confusion in the EXIF in that core tags say a D FA 100/2.8 Macro was being used while the makernotes say a DA 21/3.2 Limited was mounted and other parts say unknown lens with a focal length of 18mm with maximum aperture f/3.4 and MFD of 2.0 meters.
Best to not lean too hard on the EXIF, though it does indicate no AF points in focus (back button focus?).
I have two macro lenses. One is 50mm and the other 100mm. I can hand-hold the 50 for close focus, but not the 100 due to me swaying while doing focus-recompose with center-point. DOF is simply too thin at moderate distances and I am not steady. For whatever reason, the camera recorded
no AF points in focus. I would suggest that as the answer.
As for MFD...that would be 1:1 assuming the D FA 100/2.8 and I sincerely doubt that was the case.
Steve