Swanlefitte just indicated the Sigma is 2/3rds of a stop slower than the F stop wide open (I'm assuming similar at F4), whereas the Nikon is 4.25 at F4 (which is really close to true). So that could well be noticeable, Also assuming that it's those particular lenses and that DXOMark got it right, sample variation, yada yada.
...but yeah, the different brands do work to different values, Having had hands on most brands over the past few years I've noticed that Nikon is consistently brighter for a particular iso value, and Pentax usually dimmer, It doesn't make much of a difference for actual shooting (assuming the cameras are the same age, format, etc).
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