As
ToddK said Photomatix Pro will deal with that. It's a WB problem not CA and nothing else and the shot should be bracketed at least with 3 shots 2 E.V. spread (one for the highlights or outdoors, one "normal" and one for the shadows - 5 brackets is best (Pentax cameras do that) which allows you to choose the correct frames and trash the others), and then developed in Ptmtx which offers a brush for colours by using the "colour temperature" selector: there is also a brush for blending different frames. It's all in the tutorials and you should also look into HDR tutorials. The best source by far is this:
http://hdrlabs.com/book/
I make full 360 panos and the window problem shows up every time. I'm very happy with that software, it works every time and you don't spend all that time fiddling around with layers if you do real estate - they want the images "right now". Some extreme situations may require up to 7 brackets... See my page here:
Richard Novossiltzeff, Panorama photographer | 360Cities
---------- Post added 07-03-19 at 23:16 ----------
Originally posted by bschriver11 Look any better? I reduced the saturation on the blue channel.
Looks better but the image is flatter, try correcting it in "Levels", you might see that you need more blacks...? Try my suggestion below about bracketing your shots.