Originally posted by dave9t5 (I don't know what to make of this. I knew that AF lenses could have variations in FF/BF, but I thought with MF that WYSIWYG.
According to my understanding, your eye has the same trouble as an AF sensor. Both focusing systems have prisms in the optical path and somehow different lenses interact differently with these.
There is a logical explanation as to why an unaided AF sensor which does not take colour temperature into consideration (i.e., all pre-K-7 DSLR AF systems) will front-focus under Tungsten lighting: The prisms will direct Tungsten light to a different position compared to daylight, resulting in a phase shift and hence focus shift.
As to why focusing also seems to be dependent on lens characteristics is one of the "
three great lens mysteries" to me. One potential explanation is lens-dependent CA (shouldn't affect manual focusing though, should it?) another, which I don't believe in, says that sensing works fine but lens control is different for different lenses, i.e., small tolerances in the drive/gear make for imprecise control (should not affect manual focusing significantly, to very very small amounts, if at all, because in manual focusing there is definitely a closed feedback loop).