I usually intentionally enter slightly different FL for different lenses, even if they're all 50mm. If I put 55mm I don't think it would do any harm. But sometimes I also forgot which lens I put 50mm and which one I put 55mm
If I'm using MF lenses with my NEX, since it doesn't asked for FL at start up, I usually cover the lens with my hand and take blank/black picture, to let me know I'm changing lens. But I guess photographing the actual lens or hand sign is better.
I also have problem with remembering the aperture used, and have no work around for this
But I read somewhere, someone actually make do by using a software to manually insert FL and aperture values directly into the EXIF of the raw files, one by one, before finally importing the files to Lightroom. Now that's a bit more work than I'd like