BF/FF is of course an issue to deal with.
But are you the original owner of the camera?
If you are not the original owner, another possibility may be that a previous owner made adjustments to the AF via the debug menu, and those adjustments are still in effect.
If you are the original owner, don't worry about what I said above
My other suggestion relates to my old bugbear - use of UV or protection filters on lenses. Poor quality filters can reduce the amount of light entering the lens, interfere with the visible and IR spectrum, add extra flare and ghosting to the image, as well as simply reduce the contrast of the scene. All of which can interfere with the efficiency of the AF sensor. If you are using UV filters on your lenses that are having AF problems, remove the filters, use a hood, and see if the problem recurs.