I can remember the same thing with my old Canon AT1 and T70 film SLR manuals as well. BTW, those cameras metered at full aperture (though stop down was available) and the text in both manuals warned you about light from the viewfinder.
Fortunately, the old manual cameras required you to meter BEFORE operating the shutter, and metering was through the viewfinder or your hand held light meter (yep - had one of those too
).
In the modern dSLR world, with all the automation available, it has an effect BUT remember, it will vary depending on ambient light. So a darkenned or shaded area behind the viewfinder will have much less effect if your shooting a brighter object.
It shouldn't have any major effect on autofocus however, as the mirror has a semi-transparent region which passes light into the
base of the camera. There should be little problem from the viewfinder unless there is significant light from that side and your subject is low contrast anyway (see the SAFOX description up to version V at
Pentax Auto Focus Systems - and of course RiceHighs critique is in his blog).
So the moral of the story - carry your viewfinder cap for those moments when you take your eye away from the viewfinder.